Phylogenetic position of the enigmatic genus Atherospio and description of Atherospio aestuarii sp. nov. (Annelida: Spionidae) from Japan

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Zoological Science

Introduction

Atherospio Mackie & Duff, 1986 is a small genus in the family Spionidae Grube, 1850 that currently consists of two species: A. disticha Mackie & Duff, 1986 and A. guillei (Laubier & Ramos, 1974). The genus is closely related to Pygospiopsis Blake, 1983 (including the recently synonymized genus Pseudatherospio Lovell, 1994: Blake & Maciolek, 2018) as it has similar prostomial shapes, an occipital antenna, modified anterior neurochaetae, branchiae that are either basally or entirely fused to the notopodial lamellae, and unusual bidentate neuropodial hooks. In other spionids, the small tooth (teeth) of the neuropodial hooded hooks is (are) superior to the main fang on the convex side, while for Atherospio and Pygospiopsis the neuropodial hooded or unhooded hooks have a small tooth or knob on the concave side, which is subapical to the terminal shaft or main fang (Blake & Maciolek, 2018). Atherospio, Pygospiopsis, and a recently established genus, Aciculaspio Blake & Ramey-Balci, 2020, are collectively called the Pygospiopsis-Atherospio group (Blake & Ramey-Balci, 2020) and currently consist of nine species. Atherospio and Pygospiopsis are distinguishable as the former have their first branchiae on chaetiger 7, while the latter simple or partially fused branchiae anterior to chaetiger 7 in a variety of patterns (Blake & Maciolek, 2018). Aciculaspio differs from both Atherospio and Pygospiopsis as it has enlarged flattened branchiae fused to the dorsal lamellae from chaetiger 10 instead of 7 and simple, unidentate-hooded hooks with curved and pointed fangs (Blake & Ramey-Balci, 2020).

Blake, Maciolek & Meißner (2020) divided the spionid genera into four clades following Blake & Arnofsky (1999) and Blake (2006): (1) Subfamily Nerininae Söderström, 1920; (2) Subfamily Spioninae Söderström, 1920; (3) Clade consisting of Pygospiopsis, Atherospio, and Pseudatherospio (= Pygospiopsis-Atherospio group); and (4) five monotypic genera with no strong affinity for other spionids (Glandulospio Meißner et al., 2014; Glyphochaeta Bick, 2005; Spiogalea Aguirrezabalaga & Ceberio, 2005; Spiophanella Fauchald & Hancock, 1981; and Xandaros Maciolek, 1981). Species belonging to the Pygospiopsis-Atherospio group are superficially similar to species in subfamily Spioninae (including the Polydora complex and the genera Pygospio Claparède, 1863, Microspio Mesnil, 1896, and Spio Fabricius, 1785), some of which were originally classified as separate genera within Spioninae. Pygospiopsis dubia (Monro, 1930) was originally described as Pygospio, and Blake (1983) later established the genus Pygospiopsis for this species. Atherospio guillei was originally described as Polydora Bosc, 1802 in the Polydora complex, and later, Meißner & Bick (2005) transferred this species to Atherospio. Atherospio guillei and the species belonging to the Polydora complex both have heavy spines in the fifth segment. However, this is not considered to be evidence of a close relationship between the two taxa as these heavy spines are not homologous sensu stricto, as in A. guillei they are neuropodial, while in Polydora complex they are notopodial (Mackie & Duff, 1986; Radashevsky & Fauchald, 2000; Radashevsky, 2012).

The close relationship between the Pygospiopsis-Atherospio group and the subfamilies Spioninae and Nerininae has not been consistently supported in previous studies. The first phylogenetic analysis of the Spionidae genera using morphology by Sigvaldadóttir, Mackie & Pleijel (1997) indicated that there were four clades in the family: (1) Aonidella López-Jamar, 1989 and Xandaros; (2) Prionospio complex, Laonice Malmgren, 1867, Spiophanes Grube, 1860, and Aonides Claparède, 1864; (3) a large unresolved assemblage of genera including the Polydora complex, Scolelepis Blainville, 1828, Malacoceros Quatrefages, 1843, and Spio; and (4) Atherospio, Pseudatherospio, and Pygospiopsis, but the support for these clades was weak and the selection of outgroups was subsequently deemed unfortunate (Blake, Maciolek & Meißner, 2020). Mackie (1996) re-examined the intergeneric relationships within Spionidae examined by Sigvaldadóttir, Mackie & Pleijel (1997) by adding several new taxa and eight taxa with questionable generic attribution using the same outgroups and indicated generally consistency with the previous results, but separated the third large unresolved assemblage by Sigvaldadóttir, Mackie & Pleijel (1997) into a ‘polydorid’ group (including Pygospio muscularis Ward, 1981 and excluding Tripolydora Woodwick, 1964 and Pseudopolydora primigenia Blake, 1983) and a large group including 11 genera. He also showed that the Pygospiopsis-Atherospio group, which includes two unnamed groups provisionally assigned as ‘Genus A’ and ‘Genus B’, is sister to a clade consisting of Pseudopolydora primigenia and Pygospio elegans Claparède, 1863. The third phylogenetic analysis of the spionid genera using morphological, reproductive, and developmental characteristics from Blake & Arnofsky (1999) indicated that there were three clades: two major clades consisting of the subfamily Spioninae and a larger clade consisting of all remaining spionid genera and the genera Heterospio Ehlers, 1874 (now considered to be a taxon closely related to cirratuliform polychaetes rather than spioniforms: Blake & Maciolek, 2019), Poecilochaetus Claparède in Ehlers, 1875, Trochochaeta Levinsen, 1884, and Uncispio Green, 1982, and a third, minor clade consisting of the enigmatic genus Pygospiopsis (including Atherospio). At present, because of several unusual morphological characteristics of the Pygospiopsis-Atherospio group, its taxonomic relationship with other spionids or spioniforms is not well understood. However, Blake & Maciolek (2018) noted that the large recurved hooded hooks of P. profunda Blake & Maciolek, 2018 have similarities with the giant modified neuropodial hooks or spines of some Uncispio species.

To date, there are no available molecular data on the Pygospiopsis-Atherospio group or Uncispio deposited in the DNA Data Bank of Japan (DDBJ), the European Nucleotide Archive (ENA), or GenBank databases. Therefore, these taxa were not included in the first and recent comprehensive molecular phylogenetic analyses of the spionid genera, which was conducted by Abe & Sato-Okoshi (2021) and Wang et al. (2022), respectively. Our field surveys have identified several specimens of the genus Atherospio, which have never been recorded from Japan before, from several study sites. In this study, we report the morphology of the specimens and compare it with that of other species of the genus, and describe a new species, Atherospio aestuarii sp. nov. We also evaluate the phylogenetic position of Atherospio by conducting the first molecular phylogenetic analysis including the genus, whose phylogenetic position has remained a question until now.

Materials and Methods

Specimen collection

Specimens of the Atherospio species were collected from bottom sediments in the intertidal zone of Otomo-ura (38.9958 N, 141.6817 E), Hirota Bay, Iwate Prefecture on August 6, 2017, August 18, 2018, and August 4, 2020; subtidal zones <1 m in depth in a nameless small inlet of Ago Bay (34.2985 N, 136.8311 E), Mie Prefecture on October 8, 2021; and a small fishing port at the mouth of the Kurio River (30.2741 N, 130.4214 E) on Yakushima Island, Kagoshima Prefecture, Japan on November 6, 2021 (Figs. 1 and 2). The water areas where the specimens were collected in this study are not protected, and no permission of any kind is required to collect the organisms. In the field survey of this study, we did not collect any commercially marine species and did not use any collection method that violated the prefectural fishery regulation, so we did not need any permission for the survey.

Maps of the sampling localities of Atherospio aestuarii sp. nov.

Figure 1: Maps of the sampling localities of Atherospio aestuarii sp. nov.

(A) Japan. (B) Hirota Bay. (C) Ago Bay. (D) Yakushima Island.
Photos of the sampling localities of Atherospio aestuarii sp. nov.

Figure 2: Photos of the sampling localities of Atherospio aestuarii sp. nov.

(A) Otomo-ura in Hirota Bay, Iwate Prefecture. (B) A nameless small inlet in Ago Bay, Mie Prefecture. (C) A small fishing port at the mouth of the Kurio River in Yakushima Island, Kagoshima Prefecture.

Morphological observation

Specimens were observed and photographed in a live condition and then fixed in 10% neutral formalin seawater or 70% ethanol for morphological and molecular analyses. The morphology of the living and fixed Atherospio species was observed under a stereomicroscope (LW-820T; Wraymer, Osaka, Japan) and phase-contrast microscope (Eclipse 80i; Nikon, Tokyo, Japan). Light micrographs were obtained using a digital camera (Sony α6000, Tokyo, Japan) attached to the microscope. Live specimens were anesthetized in a 7% magnesium chloride solution if required. Four specimens were stained with a solution of methyl green in ethanol for light microscopy analysis. The type materials were deposited in the National Museum of Nature and Science (NSMT), Tsukuba, Japan, under the following museum registration numbers: NSMT-Pol H-858 and P-859–866.

The electronic version of this article in Portable Document Format (PDF) will represent a published work according to the International Commission on Zoological Nomenclature (ICZN), and hence the new names contained in the electronic version are effectively published under that Code from the electronic edition alone. This published work and the nomenclatural acts it contains have been registered in ZooBank, the online registration system for the ICZN. The ZooBank LSIDs (Life Science Identifiers) can be resolved and the associated information viewed through any standard web browser by appending the LSID to the prefix http://zoobank.org/. The LSID for this publication is: urn:lsid:zoobank.org:pub:ED1D54BF-7C4E-4277-A675-F604C743E6C7. The online version of this work is archived and available from the following digital repositories: PeerJ, PubMed Central SCIE and CLOCKSS.

Molecular analysis

Nuclear 18S, 28S, and mitochondrial 16S rRNA gene analyses were performed on the holotype and the six paratypes. Genomic DNA was extracted from 70% ethanol-preserved tissue by grinding and heating at 95 °C for 20 min in 50 μL TE buffer (pH 8.0) with 10% Chelex 100 (Bio-Rad, Hercules, CA, USA), according to Richlen & Barber (2005). Ten-fold diluted extracted DNA in TE buffer was used as a template for polymerase chain reaction (PCR). Partial sequences of the nuclear 18S, 28S, and mitochondrial 16S rRNA genes were amplified by PCR using the primer pairs 18S-1F1/18S-1R632, 18S-2F576/18S-2R1209, and 18S-3F1129/18S-R1772 for 18S (Nishitani et al., 2012), D1R/D2C for 28S (Scholin et al., 1994), and 16Sar/16Sbr for 16S (Palumbi et al., 1991). PCR was performed in a 10 μL reaction mixture containing 0.5 μL of template DNA, 4 μL of sterilized water, 5 μL of 2 × KOD One PCR Master Mix (TOYOBO, Osaka, Japan), and 0.05 μM of 50 μM forward and reverse primers. The PCR cycling conditions were 36–40 cycles of denaturation at 98 °C for 10 s, annealing at 54 °C or 56 °C (16S), or 60 °C (18S and 28S) for 5 s, and extension at 68 °C for 1 s. PCR products were purified using Enz-Sap (Edge BioSystems, San Jose, CA, USA) and sequenced by Eurofins Genomics (Tokyo, Japan). Forward and reverse complementary sequences and contigs were assembled using GeneStudio ver. 2.2.0.0 (GeneStudio, Inc. Suwanee, GA, USA). All sequences generated in this study have been deposited in the DDBJ/ENA/GenBank nucleotide sequence database under accession numbers LC685029LC685049 (Table 1).

Table 1:
Terminal taxa of spionid species and outgroups (Sabellidae) used in the phylogenetic analyses and the DDBJ/EMBL/GenBank accession numbers, together with the museum registration number of the specimens used in the present study.
The organism names of unidentified species are labeled with the identifiers in the DDBJ/EMBL/GenBank database. The classifications defined by Blake, Maciolek & Meißner (2020) and Wang et al. (2022) are also provided. The gene sequences obtained in this study are highlighted in boldface type.
Classification by Blake, Maciolek & Meißner (2020) Classification by Wang et al. (2022) Genus Species Locality Museum registration number Accession number Reference
18S 28S 16S
Pygospiopsis- Atherospio Group Atherospio Atherospio aestuarii sp. nov. Japan (Otomo-ura) NSMT-Pol P-861 LC685029 LC685036 LC685043 This study
Japan (Ago Bay) NSMT-Pol P-862 LC685030 LC685037 LC685044 This study
Japan (Ago Bay) NSMT-Pol P-863 LC685031 LC685038 LC685045 This study
Japan (Ago Bay) NSMT-Pol P-864 LC685032 LC685039 LC685046 This study
Japan (Kurio River) NSMT-Pol H-858 LC685033 LC685040 LC685047 This study
Japan (Kurio River) NSMT-Pol P-865 LC685034 LC685041 LC685048 This study
Japan (Kurio River) NSMT-Pol P-866 LC685035 LC685042 LC685049 This study
Subfamily
Nerininae
Subfamily
Nerininae
Aonidella Aonidella cf. dayi Maciolek in López-Jamar, 1989 NE Atlantic KF434504 KF434508 Meißner et al. (2014)
Aonides Aonides oxycephala (Sars, 1862) France MG913226 MG878926 MG878895 V. Radashevsky et al. (2018, unpublished data)
Aurospio Aurospio dibranchiata Maciolek, 198 Kaplan, Pacific Mn nodule province EU340091 EU340087 Mincks et al. (2009)
Aurospio foodbancsia Mincks et al. (2009) West Antarctic Peninsula shelf EU340097 EU340078 Mincks et al. (2009)
Laonice Laonice sp. VR-2006 Sweden DQ779655 DQ779693 DQ779619 Rousset et al. (2007)
Paraprionospio Paraprionospio coora Wilson, 1990 Japan LC545859 LC595689 Abe & Sato-Okoshi (2021)
Paraprionospio patiens Yokoyama, 2007 Japan LC545861 LC595691 Abe & Sato-Okoshi (2021)
Poecilochaetus Poecilochaetus serpens Allen, 1904 France AY569652 AY569680 Bleidorn, Vogt & Bartolomaeus (2005),
Poecilochaetus sp. VR-2006 France DQ779667 DQ779705 DQ779630 Rousset et al. (2007)
Prionospio Prionospio dubia Day, 1961 USA EU418859 EU418867 Struck et al. (2008)
Prionospio sp. C sensu Guggolz et al. (2020)
(as Prionospio sp. 29 PB)
Clarion–Clipperton Fracture Zone MK971148 MK971035 Bonifácio, Martínez-Arbizu & Menot (2020)
Prionospio sp. E sensu Guggolz et al. (2020)
(as Prionospio ehlersi)
CROZEX EU340095 EU340081 Mincks et al. (2009)
Prionospio sp. KJO-2005 USA DQ209226 DQ209246 Osborn et al. (2007)
Spiophanes Spiophanes cf. convexus Delgado-Blas, Díaz-Díaz & Viéitez, 2019 France MG913229 MG878931 MG878902 Radashevsky et al. (2020a)
Spiophanes uschakowi Zachs, 1933 Russia KM998760 MG878949 MG878915 Radashevsky et al. (2020a)
Streblospio Streblospio sp. India KY704336 KY704324 KY704328 T. Vijapure et al. (2017, unpublished data)
Trochochaeta Trochochaeta multisetosa (Örsted, 1844) Norway MN296517 MN193552 Radashevsky et al. (2020a)
Trochochaeta sp. THS-2006 DQ790097 DQ790070 Struck et al. (2007)
Subfamily
Spioninae
Dispio Dispio remanei Friedrich, 1956 Brazil KU900474 KU900467 M. Rebelo & M. Schettini (2016, unpublished data)
Malacoceros Malacoceros fuliginosus (Claparède, 1868) France/Germany AY525632 EF431961 Struck & Purschke (2005), Blank & Bastrop (2009)
Malacoceros cf. indicus (Fauvel, 1928) Japan LC545857 LC595687 Abe & Sato-Okoshi (2021)
Malacoceros sp. V040 Germany MN215953 MN215954 Surugiu, Schwentner & Meißner (2022)
Marenzelleria Marenzelleria arctia (Chamberlin, 1920) Russia KJ546264 KJ546214 KJ546306 Radashevsky et al. (2014)
Marenzelleria viridis (Verrill, 1873) USA/Danmark EU418860 EU418868 DQ309252 Struck et al. (2008), Bastrop & Blank (2006)
Rhynchospio Rhynchospio arenicola Hartman, 1936 USA KJ546286 KJ546236 KJ546318 Radashevsky et al. (2014)
Rhynchospio cf. foliosa Imajima, 1991
(as Rhynchospio foliosa)
USA KP986489 KP986490 KP986488 Radashevsky et al. (2016a)
Scolelepis Scolelepis squamata (Müller, 1806) Spain MN215944 MN215960 Surugiu, Schwentner & Meißner (2022)
Scolelepis texana Foster, 1971 Japan LC545882 LC595712 Abe & Sato-Okoshi (2021)
Incertae sedis Glandulospio Glandulospio orestes Meißner et al., 2014 NE Atlantic KF434505 KF434511 Meißner et al. (2014)
Subfamily
Spioninae
Boccardia Boccardia proboscidea Hartman, 1940 Japan LC107607 AB973944 LC595721 Abe, Kondoh & Sato-Okoshi (2016),
Simon, Sato-Okoshi & Abe (2019),
Abe & Sato-Okoshi (2021)
Boccardia pseudonatrix Day, 1961 France LC682681 LC682702 LC682725 W. Sato-Okoshi et al. (2022, unpublished data)
Boccardiella Boccardiella hamata (Webster, 1879) France LC682684 LC682705 LC682727 W. Sato-Okoshi et al. (2022, unpublished data)
Dipolydora Dipolydora bidentata (Zachs, 1933) Russia JX228065 JX228085 JX228103 Radashevsky & Pankova (2013)
Dipolydora giardi (Mesnil, 1893) France LC682685 LC682706 LC682728 W. Sato-Okoshi et al. (2022, unpublished data)
Microspio Microspio granulata Blake & Kudenov, 1978 Australia KP636515 KP636514 Meißner & Götting (2015)
Polydora Polydora cornuta Bosc, 1802 Japan LC541483 LC541485 LC541484 Abe & Sato-Okoshi (2020)
Polydora hoplura Claparède, 1868 Japan LC101841 LC101854 LC101870 Sato-Okoshi et al. (2017)
Polydora onagawaensis Teramoto, Sato-Okoshi, Abe, Nishitani & Endo, 2013 Japan AB691768 LC682719 LC595745 Teramoto et al. (2013),
Abe & Sato-Okoshi (2021),
W. Sato-Okoshi et al. (2022, unpublished data)
Polydorella Polydorella dawydoffi Radashevsky, 1996 Vietnam MG460975 MG460900 Radashevsky et al. (2020b)
Pseudopolydora Pseudopolydora paucibranchiata (Okuda, 1937) Japan LC019991 LC019995 LC595758 Abe, Kondoh & Sato-Okoshi (2016),
Abe & Sato-Okoshi (2021)
Pseudopolydora tsubaki Simon, Sato-Okoshi & Abe, 2017 Japan AB973929 AB973937 LC107857 Simon, Sato-Okoshi & Abe (2019)
Pygospio Pygospio elegans Claparède, 1863 Russia KJ747074 KJ747064 KJ747084 Radashevsky et al. (2016b)
Pygospio sp. VVP-2014 USA KJ747077 KJ747067 KJ747087 Radashevsky et al. (2016b)
Spio Spio filicornis (O. F. Müller, 1776) Greenland FR823431 FR823436 Meißner, Bick & Bastrop (2011)
Spio sp. 2573 Russia KT200135 KT200143 KT200126 Radashevsky et al. (2016b)
Sabellidae
(Outgroup)
Sabellidae
(Outgroup)
Amphicorina Amphicorina mobilis (Rouse, 1990) Japan/Australia AB646767 AB646766 HM800966 Yoshihara et al. (2012), Capa et al. (2011)
Sabella Sabella pavonina Savigny, 1822 -/Sweden/France U67144 AY612632 AY340482 S. Nadot & A. Grant (1996, unpublished data), Persson & Pleijel (2005), Rousset et al. (2007)
DOI: 10.7717/peerj.13909/table-1

To reconstruct the molecular phylogeny, sequences of the 18S, 28S, and 16S rRNA genes were aligned with the sequences of other spionid species and outgroups obtained from GenBank (Table 1) using the MAFFT online service ver. 7 (Katoh, Rozewicki & Yamada, 2017) and the L-INS-i algorithm. The gene sequences of the sabellid species Amphicorina mobilis (Rouse, 1990) and Sabella pavonina Savigny, 1822, obtained from DDBJ/ENA/GenBank, were used as the outgroup taxa (Table 1). Ambiguously aligned regions were eliminated using the Gblocks server ver. 0.91b with the least stringent settings (Castresana, 2000; Talavera & Castresana, 2007). The final lengths of the aligned sequences were 1,703, 663, and 434 bp for the 18S, 28S, and 16S rRNA gene sequences, respectively (File S1). A phylogenetic tree was constructed based on the concatenated sequences of the 18S, 28S, and 16S rRNA gene regions using maximum likelihood (ML) analyses performed with IQ-TREE (Nguyen et al., 2015) implemented in PhyloSuite v.1.2.2 (Zhang et al., 2020) under an edge-linked partition model. The TNe+I+G4, TIM3+F+I+G4, and TIM2+F+I+G4 models were selected as the best substitution models for the 18S, 28S, and 16S rRNA gene regions, respectively, by ModelFinder (Kalyaanamoorthy et al., 2017) as implemented in IQ-TREE under the Bayesian information criterion (BIC). We evaluated the robustness of the ML trees using the Shimodaira–Hasegawa–like approximate likelihood-ratio test (SH-aLRT) with 5,000 replicates (Guindon et al., 2010), the approximate Bayes (aBayes) test (Anisimova et al., 2011), and ultrafast bootstraps (UFBoot) with 5,000 replicates (Hoang et al., 2018). An SH-aLRT ≥ 80%, aBayes ≥ 0.95, and UFBoot ≥ 95% were defined as robust statistical supports.

Results

Systematics

Family Spionidae Grube, 1850

Genus Atherospio Mackie & Duff, 1986

Type-species: Atherospio disticha Mackie & Duff, 1986

Diagnosis (Emended from Meißner & Bick, 2005). Prostomium deeply incised, longer than wide, posteriorly tapered and extended into a short caruncle; occipital antenna present or absent or minute process at the position of this antenna present. Nuchal organs small or indistinct. Dorsal branchiae from chaetiger 7; branchiae with distal digitiform process, outer branchial margin completely fused with notopodial postchaetal lamella. Parapodia biramous with well developed postchaetal lamellae and alimbate mostly hirsute capillaries in noto- and neuropodia. Chaetigers 4 and 5 or only chaetiger 5 with modified chaetae in the neuropodium being falcate and pointed or aristate spines, modified chaetae in regular or irregular short vertical rows superior to several capillary chaetae. Neuropodial hooks alongside capillaries; hooks uni-or bidentate, secondary tooth below main fang; hook distally with closely applied sheath. Notopodial hooks absent. Posterior spine-like notochaetae present or absent. Sabre chaetae absent but several capillaries in inferiormost position throughout the body. Genital pouches absent. Pygidium surrounded by several pairs of lateral cirri.

Remarks. The morphology of the new species described below is generally consistent with the diagnosis for the genus Atherospio by Meißner & Bick (2005). Since the description of “Dorsal branchiae on chaetiger 7 and following 4–6 chaetigers” and “Postbranchial neuropodial hooks” in the diagnosis provided by Meißner & Bick (2005) does not apply to the new species, we emended these parts of the diagnosis as “Dorsal branchiae from chaetiger 7” and “Neuropodial hooks”, respectively, to include the new species. Following the definition of caruncle by Wong et al. (2014), “a dorsal extension of the prostomium, taking the form of an elevation or a distinct crest separating the nuchal organs one from another”, the posterior tapered and elongated part of the prostomium present in the known Atherospio species is regarded as a short caruncle. Therefore, we modified the posterior part of prostomium, which is considered “not extended into a distinct caruncle” in the diagnosis by Meißner & Bick (2005), to be a short caruncle. We also emended the arrangement of the modified spines from “a irregular short row” to “regular or irregular short vertical rows” since the modified spines are in very regular vertical rows in A. disticha and A. aestuarii sp. nov. and two forms of spines gathered in irregular, short rows in A. guillei. We added to the diagnosis that posterior needle-like notochaetae are found in A. guillei and the new species.

Atherospio aestuarii sp. nov.

Japanese name: Irie-nogi-supio

LSID. urn:lsid:zoobank.org:act:287692C4-C105-41BC-8718-37C6BBE10B7C

(Figs. 3 and 4)

Atherospio aestuarii sp. nov. Light micrographs showing the morphology of preserved (A, B, D) and live (C, E, F) specimens (holotype: NSMT-Pol H-858).

Figure 3: Atherospio aestuarii sp. nov. Light micrographs showing the morphology of preserved (A, B, D) and live (C, E, F) specimens (holotype: NSMT-Pol H-858).

(A) Entire body. (B) Anterior chaetigers, dorsal view (methyl green stained). (C) Anterior chaetigers, lateral view. (D) Anterior chaetigers, lateral view (methyl green stained). (E) Chaetigers 4–11, lateral view. (F) Posterior end, lateral view. Scale bars: (A) = 2 mm; (B, D) = 1 mm; (C, E, F) = 500 μm.
Atherospio aestuarii sp. nov. Light micrographs showing the morphology of living (A) and fixed (B–G) specimens (paratypes).

Figure 4: Atherospio aestuarii sp. nov. Light micrographs showing the morphology of living (A) and fixed (B–G) specimens (paratypes).

(A) Anterior chaetigers, dorsal view (NSMT-Pol P-866). (B) Anterior chaetigers, dorsal view (methyl green stained, NSMT-Pol P-862), arrowheads indicate the nuchal organs. (C) Anterior chaetigers, ventral view (methyl green stained, NSMT-Pol P-862). (D) Neurochaetae in left parapodium from chaetiger 5, anterior view (NSMT-Pol P-866), black and white arrowheads indicate the aristate spines in the anterior and posterior row, respectively. (E) Left parapodium from chaetiger 5, anterior view (NSMT-Pol P-866). (F) Right parapodium from chaetiger 7, anterior view (NSMT-Pol P-866), arrowhead indicates the digitiform process at the distal end of the branchia. (G) Neuropodial hooded hooks from chaetiger 34 (NSMT-Pol P-860). Scale bars: (A, C) = 500 μm; (B) = 300 μm; (D–G) = 10 μm.

Type material. Holotype: NSMT-Pol H-858, small fishing port at the mouth of the Kurio River, 30.2741 N, 130.4214 E, Yakushima Island, Kagoshima Prefecture, subtidal, <1 m depth, muddy sand, November 6, 2021 (complete specimen). Paratypes: NSMT-Pol P-859, Otomo-ura, 38.9958 N, 141.6817 E, Hirota Bay, Iwate Prefecture, intertidal, gravelly muddy sand, August 6, 2017 (incomplete 1 specimen); NSMT-Pol P-860, Otomo-ura, 38.9958 N, 141.6817 E, Hirota Bay, Iwate Prefecture, intertidal, gravelly muddy sand, August 18, 2019 (incomplete 1 specimen); NSMT-Pol P-861, Otomo-ura, Hirota Bay, 38.9958 N, 141.6817 E, Iwate Prefecture, intertidal, gravelly muddy sand, August 4, 2020 (incomplete 1 specimen); NSMT-Pol P-862 (incomplete 1 specimen), NSMT-Pol P-863 (incomplete 7 specimens), NSMT-Pol P-864 (incomplete 1 specimen), nameless small inlet in Ago Bay, 34.2985 N, 136.8311 E, Mie Prefecture, subtidal, <1 m depth, gravelly muddy sand, October 8, 2021; NSMT-Pol P-865 (incomplete 1 specimen), NSMT-Pol P-866 (incomplete 2 specimens), small fishing port at the mouth of the Kurio River, 30.2741 N, 130.4214 E, Yakushima Island, Kagoshima Prefecture, subtidal, <1 m depth, muddy sand, November 6, 2021.

Description. Holotype complete (pygidium damaged) with 64 chaetigers, measuring 9.5 mm long and 1.2 mm wide at chaetiger 5 (Fig. 3); paratypes incomplete up to 14.4 mm long, 1.5 mm wide for 40 chaetigers. Body wide, dorsoventrally flattened for first six chaetigers (Figs. 3B and 4A), then gradually narrower and becoming cylindrical in cross-section. Body white to light tan in preserved specimen (Fig. 3A), translucent white to light tan when alive with red blood vessels and pale orange to brown digestive tract internally (Figs. 3C, 3E and 4A); body and palp pigmentation absent.

Prostomium longer than wide, anteriorly incised; extends posteriorly as caruncle to middle of chaetiger 1 (Figs. 3B and 4A). Eyes dark red, two pairs arranged in trapezoidal shape, lateral pair situated anteriorly, kidney-shaped, larger than medial ones (Figs. 4A and 4B). Occipital antenna absent. Nuchal organs U-shaped with outward curving posterior part, located just behind prostomium and between notopodial lamellae of chaetiger 1 (Figs. 3B and 4B). Palps arising lateral to prostomium (Fig. 4A). Peristomium extending lateral to prostomium, forming upper lip of mouth and extending ventrally forming ventral lip of mouth; thick everted proboscis or pharynx present; oral lips relatively smooth; peristomial papillae (see Blake & Maciolek, 2018) absent.

Chaetigers 1–6 abranchiate (Figs. 3B, 3C and 4A). Notopodial postchaetal lamellae long, digitiform or lanceolate on chaetiger 1 (Figs. 3B and 4C), broader on chaetiger 2, and becoming broad triangular or oval on chaetigers 3–6 (Fig. 4E). Neuropodial lamellae digitiform or lanceolate on chaetiger 1, broad triangular on chaetiger 2, and oval to triangular on chaetigers 3–6. Chaetiger 5 of same size as neighboring chaetigers. Midventral series of white rectangular pads in anterior chaetigers, indistinct in fixed specimens.

Branchiae from chaetiger 7 to 18–23 (File S2), long and cirriform, with digitiform process at distal end (Fig. 4F); overlapping mid-dorsal or not, full-sized from chaetigers 10–12; fully fused with notopodial postchaetal lamellae in outer margin (Fig. 4F); ciliation along inner margin, extending to a transverse ciliated band across the whole width of the chaetiger. In branchial chaetigers, notopodial postchaetal lamellae foliated and often wavy, especially when alive (Figs. 3C and 3E); neuropodial postchaetal lamellae rounded, larger dorsoventrally than that of chaetigers 1–6 (Fig. 4F). In postbranchial chaetigers, both postchaetal lamellae smaller, rather more subtriangular.

Notochaetae in most chaetigers long slender capillaries without limbations; some posterior notopodia with bundles of needle-like capillaries raised dorsally (Fig. 3F); notopodial hooks absent. Neurochaetal capillaries without limbations in anterior chaetigers. Neuropodia of chaetiger 5 double vertical rows of aristate spines dorsal to small bundle of capillaries; spines in posterior row slightly thicker than those of closely applied anterior row, taper steeply towards tip with short aristae part; spines in the anterior row taper gradually towards tip with long aristae part (Figs. 4D and 4E). Hooded hooks in neuropodia from chaetigers 16–19 (File S2) to the posterior-most chaetiger, accompanied by capillaries in all chaetigers; numbering up to 6 in a series, reduced in posterior chaetigers, shafts S-curved, hooks bidentate with secondary tooth on concave side at right angle to and below main fang (Fig. 4G). Neuropodial sabre chaetae absent.

Pygidium without anal cirri probably due to damage.

Methyl green staining. Anterior half of the prostomium deeply stained (Fig. 3B). Peristomium stained with vertical stripes (Figs. 3D and 4C). Tips of some post-chaetal lamellae deeply stained. Chaetigers 1–6 diffusely stained with scattered deeply stained cells on both dorsal and ventral sides; chaetiger 7 onward more strongly stained than chaetigers 1–6 on dorsal ventral, and lateral sides (Figs. 3B, 3D and 4C). Unstained ventral large white spots, one pair per chaetiger, present from chaetiger 2 to posterior middle-body chaetigers (Fig. 4C).

Remarks. Atherospio aestuarii sp. nov. closely resembles A. disticha and A. guillei and is intermediate in morphology between these species. Atherospio aestuarii sp. nov. is similar to A. disticha and differs from A. guillei in having branchiae fused to the notopodial lamellae on a restricted number of segments from chaetiger 7, modified neurochaetae on chaetiger 5, and at least some bidentate neuropodial hooks with the secondary tooth below the main fang (Table 2). The form and arrangement of the modified aristate neurochaetae in double vertical rows closely resemble those found on chaetigers 4 and 5 of A. disticha. The new species lacks the occipital antenna present in A. disticha. In this respect it resembles A. guillei, however, that species differs in having robust neuropodial spines on chaetiger 5 and peristomial papillae (see Meißner & Bick, 2005: fig. 2C), and a preponderance of unidentate neurochaetae. Both A. guillei and the new species have slender needle-like notochaetae in their posteriormost chaetigers. Atherospio aestuarii sp. nov. is distinguished from both congeneric species by its branchial and neuropodial hook distributions; as the last branchial chaetiger and the first chaetiger with neuropodial hook are more posterior in the former species. The other two nominal Atherospio species were collected from ≥27 m depths in the subtidal zone (Table 2), whereas the new species was unique in that it was recorded at relatively shallow depths, which included intertidal zones.

Table 2:
Taxonomic characteristics of three species in Atherospio Mackie & Duff, 1986.
Character Species
A. disticha Mackie & Duff, 1986 A. guillei (Laubier & Ramos, 1974) A. aestuarii Abe & Kan, sp. nov.
Prostomium: anterior margin 2 rounded lobes 2 lobes, deeply incised 2 lobes, deeply incised
Occipital antenna Short Absent Absent
Peristomial papillae Not reported Present Absent
Anterior notopodial lamellae1 1–2: digitiform; 3–6: broad, triangular 1: digitiform; 3–6: broad, triangular 1: digitiform; 3–6: broad, triangular or oval
Anterior neuropodial lamellae1 1–2: broad, triangular; 3–6: elliptical 1: digitiform; 3–6: broadly rounded 1: digitiform; 3–6: oval to triangular
Branchial distribution1 7 to 11/12: broad, fully fused to dorsal lamellae 7 to 11–13: long, thick, fully fused to dorsal lamellae 7 to 18–23: long, thick, fully fused to dorsal lamellae
Modified anterior neurochaetae Chaetigers 4–5 with double vertical row of aristate spines Chaetiger 5 with 2–3 heavy spines and 3+ thin spines Chaetiger 5 with double vertical row of aristate spines
Posterior neuropodial hooks Bidentate hooded hooks with narrow, curved shaft from chaetiger 13–15 Uni- and bidentate with straight or curved shaft; hood absent; from chaetiger 15–16 Bidentate hooded hooks with narrow, curved shaft from chaetiger 16–19
Posterior needle-like notochaetae Absent Present Present
Pygidium 6–9 cirri 8 cirri Unknown
Methyl green staining Not tested No pattern Prostomium, peristomium, and posterior to 7th chaetiger are clearly stained
Distribution West coast of Scotland: 27 m, Celtic Deep: >100 m, Kattegat: 50 m North Sea: 38–41 m, Mediterranean Sea: 44–99 m Japan, intertidal to subtidal shallower than 1 m depth
References Mackie & Duff (1986), Mackie, Oliver & Rees (1995) Laubier & Ramos (1974), Meißner & Bick (2005) This study
DOI: 10.7717/peerj.13909/table-2

Note:

Numbers refer to the chaetigers on which the character appears.

Mackie, Oliver & Rees (1995) and Mackie & Garwood (1995) reported two provisionally unnamed spionid taxa closely related to A. disticha from Cardigan Bay in the Irish Sea as ‘Spionidae gen. A’ and ‘Spionidae gen B’ and mentioned that ‘Spionidae gen. B’ is morphologically similar to A. guillei (as Polydora). Several Atherospio related taxa collected from Europe and Hong Kong including ‘Spionidae gen. A’ and ‘Spionidae gen B’ were referred as ‘Genus A’ and ‘Genus B’ (include A. guillei, but may also involve two separate taxa) in Mackie (1996). In his character matrices which provided the main characteristics of the morphology of these two groups (Mackie, 1996: Tables 2 and 3), ‘Genus A’ and ‘Genus B’ are distinguished by the former lacking and the latter having posterior modified notochaetae and the former having one type of anterior modified neurochaetae but the latter having two types. Atherospio aestuarii sp. nov. does not fall into either group because it has posterior needle-like notochaetae and one type of anterior modified neurochaetae.

Etymology. The specific name aestuarii is from the Latin word aestuarium, which means the estuary, inlet, and intertidal zone, thus referring to the habitat of this species.

Habitat. Muddy and gravelly muddy sand sediment in the intertidal to subtidal zone, <1 m in depth.

Distribution. Currently identified in Otomo-ura, Hirota Bay (Iwate Prefecture), Ago Bay (Mie Prefecture), and Yakushima Island (Kagoshima Prefecture), Japan.

Molecular phylogeny

The intraspecific p-distances in the 18S, 28S, and 16S rRNA gene sequences of the seven A. aestuarii sp. nov. specimens were 0%, 0–0.26%, and 0–2.20%, respectively. In the molecular phylogenetic analyses based on the concatenated sequences, the Polydora complex + Pygospio, subfamily Spioninae sensu Blake, Maciolek & Meißner (2020) + Glandulospio, and that plus Marenzelleria Mesnil, 1896, Rhynchospio Hartman, 1936, Atherospio, Dispio Hartman, 1951, Scolelepis, and Malacoceros were recovered as clades with robust statistical support (SH-aLRT ≥ 80%, aBayes ≥ 0.95, UFBoot ≥ 95%) (Fig. 5). Atherospio aestuarii sp. nov. formed a clade with Dispio and Scolelepis, however, the support value for the node was not robust (SH-aLRT = 76.3, aBayes = 0.99, UFBoot = 54).

Maximum likelihood tree inferred from concatenated sequences of nuclear 18S and 28S and mitochondrial 16S rRNA gene sequences of spionid species obtained in the present study and from the DDBJ/EMBL/GenBank database (Table 1).

Figure 5: Maximum likelihood tree inferred from concatenated sequences of nuclear 18S and 28S and mitochondrial 16S rRNA gene sequences of spionid species obtained in the present study and from the DDBJ/EMBL/GenBank database (Table 1).

The gene sequences obtained in this study are highlighted in boldface. The organism names of unidentified species are labeled with the identifiers in the DDBJ/EMBL/GenBank database. The subfamily classifications defined by Blake, Maciolek & Meißner (2020) and Wang et al. (2022) are shown in the colored bars on the right side and black, blue, red, green, and yellow bars indicate the family Spionidae, subfamilies Spioninae and Nerininae, Polydora complex, and Prionospio complex, respectively. SH-aLRT/approximate Bayes support/ultrafast bootstrap support values of ≥80%/≥0.95/≥95%, respectively are given beside the respective nodes. Nodes with red circles indicate triple high support values of SH-aLRT ≥ 80, approximate Bayes support ≥0.95, and ultrafast bootstrap support ≥95. The scale bar represents the number of substitutions per site. Sequences of Amphicorina mobilis and Sabella pavonina are used for outgroup rooting.

Discussion

In contrast to the results of phylogenetic analyses by Sigvaldadóttir, Mackie & Pleijel (1997) and Blake & Arnofsky (1999), our molecular phylogenetic analysis indicated that Atherospio aestuarii sp. nov. did not form a clade distinct from the subfamilies Spioninae and Nerininae, but rather could be included within a clade that included the genera of the subfamily Spioninae sensu Blake, Maciolek & Meißner (2020) plus Glandulospio, Marenzelleria, Rhynchospio, Scolelepis, Dispio, and Malacoceros (Fig. 5). This clade corresponds to that referred to as the subfamily Spioninae in the alternative classification of the subfamily suggested by Wang et al. (2022) based on the results of molecular phylogenetic analysis. Monophyly of Spioninae sensu Wang et al. (2022) was supported also by Abe & Sato-Okoshi (2021) and the present study. However, the alternative subfamily classification suggested by Wang et al. (2022) has the following problems: (1) Nerininae sensu Wang et al. (2022) has been recovered as either monophyletic with low support (Wang et al., 2022) or as paraphyletic (Abe & Sato-Okoshi, 2021, this study) and (2) if Nerininae does not include Scolelepis, then this subfamily is not valid because the type-genus is Nerine which is a junior synonym of Scolelepis. The paraphyly of Nerininae sensu Blake, Maciolek & Meißner (2020) is also clearly indicated by the previous (Abe & Sato-Okoshi, 2021; Wang et al., 2022) and the present study. Our understanding of the phylogenetic relationships among the spionid genera is still in a precocious phase, and therefore the subfamily classification of the Spionidae should be revisited with more comprehensive and robust molecular phylogenetic tree as well as non-molecular data such as morphology, development, and reproduction about representatives of many genera. Nevertheless, our molecular phylogenetic analysis supports previous recognitions by Mackie & Duff (1986), Radashevsky & Fauchald (2000), and Radashevsky (2012) which indicate that the members belonging to the Pygospiopsis-Atherospio group are not closely related to the superficially similar taxa, that is, Polydora and Pygospio, and that the heavy spines in the fifth segments of Polydora and Atherospio are not homologous sensu stricto. The possibility of a close relationship between Atherospio and Dispio/Scolelepis is worth further investigation through molecular phylogenetic analysis with the addition of potential closely related taxa such as Australospio Blake & Kudenov, 1978 (Sigvaldadóttir, Mackie & Pleijel, 1997), Lindaspio Blake & Maciolek, 1992 (Mackie, 1996), and Pygospiopsis, as the statistical support for the clade was not robust in the present study.

Supplemental Information

Multiple sequence alignment of concatenated 16S, 18S, and 28S rRNA gene sequences used for molecular phylogenetic analysis.

DOI: 10.7717/peerj.13909/supp-1

Raw data for morphological measurements.

DOI: 10.7717/peerj.13909/supp-2
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