Journal of Colloid and Interface Science 488 (2017) 149–154
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Journal of Colloid and Interface Science
journal homepage: www.elsevier.com/locate/jcis
Regular Article
A comparative study on kinetics and substrate specificities
of Phospholipase A1 with Thermomyces lanuginosus lipase
Ruipu Xin a, Faez Iqbal Khan b, Zexin Zhao c, Zedong Zhang a, Bo Yang c, Yonghua Wang a,⇑
a
College of Food Sciences and Engineering, South China University of Technology, Guangzhou 510640, PR China
School of Chemistry and Chemical Engineering, Henan University of Technology, Zhengzhou 450001, PR China
c
School of Bioscience and Bioengineering, South China University of Technology, Guangzhou 510006, PR China
b
g r a p h i c a l a b s t r a c t
DOPC
Air
h
Water
√
C-terminal
Region
TLL
PLA1
C-terminal region played significant role in
enzyme acvity and substrate specificity.
a r t i c l e
i n f o
Article history:
Received 4 August 2016
Revised 20 October 2016
Accepted 20 October 2016
Available online 21 October 2016
Keywords:
Lipase
Phospholipase A1
Chain-length specificity
Regiospecificity
Monolayer
Interfacial binding
Substrate specificity
a b s t r a c t
The mechanism of lipase binding to the lipid-water interface is crucial for substrate specificity and kinetic
properties. In this study, the chain-length specificity, regiospecificity and substrate specificity of
Phospholipase A1 (PLA1) and its parent enzyme Thermomyces lanuginosus lipase (TLL) have been investigated using a classical emulsion system. The results show that both PLA1 and TLL are 1,3-regioselective
lipases. Additionally, the hydrolytic activity of PLA1 is comparatively lower on short-chain triacylglyceride (TAG) and higher on phosphatidylcholine (PC) than the hydrolytic activity of TLL. Further, the
results obtained with monolayer film techniques demonstrate that the C-terminal region regulates the
binding of PLA1 to PC. A hypothesis is presented according to which the a9 helix of C-terminal region
in PLA1 not only controls the opening of lid but also serves as a membrane anchor that assists in binding
to PC. These findings bring new insight into rational design of novel lipases with intriguing
functionalities.
Ó 2016 Elsevier Inc. All rights reserved.
Abbreviations: PLA1, phospholipase A1; TLL, Thermomyces lanuginosus lipase; TAG, triacylglyceride; PC, phosphatidylcholine; FOL, Fusarium oxysporum lipase; RML,
Rhizomucor miehei lipase; TC4, tributyrin; TC10, trioctanoin; TC18, triolein; DOPC, 1,2-dioleoyl-sn-glycero-3-phosphocholine; b-CD, b-cyclodextrin; YLLIP8, Yarrowia lipolytica
LIP8; CBD, cellulose binding domain; GZEL, Gibberella zeae lipase; kcat/KM, catalytic efficiency; KM, substrate affinity constant; FA, fatty acid; LCFA, long chain fatty acid.
⇑ Corresponding author.
E-mail address: yonghw@scut.edu.cn (Y. Wang).
http://dx.doi.org/10.1016/j.jcis.2016.10.058
0021-9797/Ó 2016 Elsevier Inc. All rights reserved.
150
R. Xin et al. / Journal of Colloid and Interface Science 488 (2017) 149–154
1. Introduction
Lipases (E.C. 3.1.1.3) are interfacial enzymes that catalyze the
hydrolysis of lipids at the lipid-water interface [1,2,3]. The reaction
involves binding of the lipase to the lipid-water interface [4],
which is crucial in controlling substrate specificity and activity
by altering both, the structure of the lipase and the physical state
of the interface [5].
Compared with enzyme reactions occurring in homogeneous
phase, lipase reactions are fairly difficult to investigate. Various
effects can interfere with the hydrolytic reaction such as the organization of the substrates in emulsions, monolayers, micelles, vesicles or liposomes [3]. Mostly, two approaches have been used to
measure the kinetic properties of lipases, i.e. the pH-stat method
using emulsified substrates and the baro-stat with lipid films
(monolayer film technique). Using the pH-stat method in emulsion
systems, the migration of lipases between lipid particles, substrate
replenishment, alteration and destabilization of lipid particles
affect the kinetic properties of lipases [6]. Monolayer techniques
enable control of interfacial properties, such as the orientation
and packing of the molecules, the changes in lateral density as well
as the variations in lipid organization and structure [7,8], which
also influence the substrate specificity of lipases [8–12]. Therefore,
both methods provide complementary information on the kinetic
properties of lipases.
The action of lipase binding to the lipid-water interface has
been studied extensively, revealing a prominent role of the
C-terminal domain also influences substrate specificity and activity
of lipases [4,5,13–15]. Phospholipase A1 (PLA1), which is a fusion
protein of Thermomyces lanuginosus lipase (TLL) and an extra
C-terminal region of Fusarium oxysporum lipase (FOL) [16], has
been described to undergo interfacial activation [17]. Despite of
the importance of both PLA1 and TLL in various industrial processes
[18–27], a comparative study of the kinetic properties of both
lipases is still missing today.
Therefore in this study, the amino acid sequence and structure
of PLA1 and TLL were analyzed. Particularly, the different substrate
scopes of PLA1 and TLL were investigated using the classical
emulsion system. Furthermore, the interfacial properties of PLA1
and TLL were investigated on TAG and PC films using monolayer
film technique.
2. Material and methods
2.1. Chemicals
Soybean-phosphatidylcholine (Soybean-PC) was purchased
from Avanti Polar Lipids (Alabama Alabaster, America). Tributyrin
(TC4, 99%), trioctanoin (TC10, 99%), triolein (TC18, 99%), 1,2dioleoyl-sn-glycero-3-phosphocholine (DOPC, 99%), chloroform
(99%) and methanol (99%) were purchased from Sigma-Aldrich
(Shanghai, China). Soybean oil was obtained from Donlinks
(Guangzhou, China). b-cyclodextrin (b-CD) and microcrystalline
cellulose were purchased from Aladdin (Shanghai, China). NaOH
and ethanol were procured from Guangzhou Chemical Reagent
Factory (Guangzhou, China). Milli-Q water (P18.2 MX cm) was
used in all experiments. All other chemicals were of analytical
grade.
2.2. Lipases purification
The gene of PLA1 was previously synthesized by Sangon
(Shanghai, China) [28]. The PLA1 lipase gene was cloned
downstream of the cellulose binding domain (CBD) tag in the
pET23a vector as described previously [29]. PLA1 with CBD tag
(PLA1-CBD) was expressed in E. coli strain SHuffleÒ T7 expression
system. The purification of PLA1 was performed as described
previously by Lan et al. [29].
Accordingly, crude enzymes of T. lanuginosus lipase (TLL,
Lipozyme TL100L) were provided by Novozyme (Copenhagen,
Denmark). TLL was purified using a Q Sepharose column (GE,
Boston, USA) as described by Qin et al. [30]. SDS-PAGE analysis of
the purified PLA1 and TLL proteins showed a predominant protein
band with the apparent molecular weights of approximately 35
and 30 kDa, respectively (Fig. S1).
The enzyme solutions of PLA1 and TLL were concentrated by
ultrafiltration and exchanged with 0.1 M PBS buffer (pH 7.0).
Protein concentrations were determined by the Bradford method
using bovine serum albumin as a reference [31].
2.3. Sequence and structure analysis
The amino acid sequences of related lipases were aligned using
the Blast search and alignment tool of the Universal Protein Knowledge Base (www.uniprot.org), and presented using ESPript [32,33].
The protein structures of PLA1 and TLL were aligned and visualized
using PyMol (DeLano Scientific LLC) [34].
2.4. Lipase activity measurements
Lipase activity was assayed with a pH-stat device (Radiometer,
Copenhagen, Denmark) in a thermostatic vessel (25 °C). Each assay
was performed with a mechanically stirred emulsion of TAG or PC
as substrate. The specific activity of lipase was determined by
titrating the free fatty acids (FAs) liberated during the hydrolysis
reaction by PLA1 and TLL. The specific activity was expressed in
units (U) per milligram of lipase. One U corresponds to 1 lmol of
free fatty acid released per minute. The values are presented
in mean ± standard deviation based on three independent
experiments.
2.5. Kinetic measurements by monolayer film technique
Micro TroughX Langmuir-Blodgett trough procured from Kibron
Inc. (Espoo, Finland) was used to measure the enzymatic kinetics at
25 °C. The Teflon trough is composed of a reaction compartment
(volume, 3 mL; surface area, 12.56 cm2) and two reservoir compartments (surface area, 55.46 cm2), both of which are connected
with the reaction compartment by one narrow surface channel. A
force probe comprised of a tensometric cantilever was placed the
interface in the center of the trough to measure the surface
pressure based on Wilhelmy plate method [9]. The precision in
the measurement of the surface pressure by the Wilhelmy plate
method was ±0.1 mN m 1.
The trough and barriers were rinsed with ethanol and Milli-Q
water prior to use. The surface pressure of the interface was
adjusted to zero. Residual surface-active impurities on the Teflon
trough were removed before each experiment by simultaneously
sweeping and suction of surface [9]. Experiments proceeded after
the change in surface pressure was less than 0.5 mN m 1. A magnetic stirrer (0.5-cm) was used to stir the subphase at 250 rpm.
The aqueous subphase contained PBS buffer (10 mM, pH 7.0),
which was prepared with Milli-Q water and filtered through a
0.45-lm Millipore membrane. The DOPC and triolein were
dissolved quickly in chloroform/methanol solution (3:1 v/v) at
20 °C, as described previously [35–37]. The monolayer was
prepared by spreading 20 lL of DOPC solution (0.2 g L 1) using a
Hamilton microsyringe. The waiting time for the solvent evaporation varied between 10 and 15 min. The desired initial surface
pressure (pi) was reached by moving two barriers at a rate of
10 mm min 1. The enzyme solution was injected into the subphase
R. Xin et al. / Journal of Colloid and Interface Science 488 (2017) 149–154
after organic solvents were evaporated. Enzymatic activities were
determined using the baro-stat technique on a ‘‘zero-order” trough
[38]. The surface activity was defined as the amount of substrate
that was hydrolyzes per minute, per surface area in the reaction
compartment, which contained 1 M of lipase. All experiments were
carried out in triplicate.
3. Results and discussion
151
activation mechanism [40]. Because the amino acid residue Asp294
of the C-terminal helix and the Arg87 of the lid a3 helix are conserved in PLA1 and GZEL (Fig. 1B), a similar ‘double-lock’ activation
mechanism may be hypothesized for PLA1 as well. Lipases without
the extra C-terminal helix (TLL and RML) should follow the normal
activation mechanism. Notably, the C-terminal helix (Asp294) of
PLA1 may transiently interact with the lid a3 helix (Arg87) and play
a critical role in controlling the lid opening and enzyme activity.
3.1. Sequence alignment and structural comparison
3.2. Chain-length specificity and regiospecificity on TAG
PLA1 has a high amino acid similarity with Gibberella zeae
lipase (GZEL) (94.14%), TLL (84.38%) and RML (56.92%), respectively. The three-dimensional structure of PLA1 has been modeled
using the crystal structures of the above mentioned lipases as
templates by An et al. [18]. The structure of PLA1 was superimposed on TLL with a RMSD for Ca of 0.397 Å. One of the key differences observed between the two lipases is that PLA1 possesses an
additional C-terminal region composed of a 55-residue extension
(Asn269-Ala315) (Fig. 1). The flexible coil region (Asn269-Thr291) of
GZEL [39,40] appears to be partially disordered in PLA1. The coil
sequence followed by the helical region (Asp292-Lys311) of PLA1 is
expected to temporarily interact with the enzyme surface, as
observed with other lipases [15,41]. Similar C-terminal extensions
have also been reported in other lipases [15].
In the closed form of GZEL, the a9 helix (Asp293) interacts with
the a3 helix (Arg86) [40]. Lou et al. proposed a novel ‘double-lock’
The regioselectivity of both PLA1 and TLL on TAGs was as
expected [42–45]. During the hydrolysis of soybean oil no evidence
for 1,3-DAG was found confirming the reported 1,3-selectivity of
the enzymes.
To investigate the chain-length specificity of PLA1 and TLL, three
different TAGs (TC4, TC10 and TC18) were selected. PLA1 was mainly
active on medium-chain TAGs (TC10) and less active on short-chain
TAGs (TC4) (Table 1 and Fig. 2). The specific activities of PLA1 were
477.04, 3092.35 and 1463.11 U/mg with TC4, TC10 and TC18 as substrates, respectively. However, TLL hydrolyses more efficiently the
short-chain TAGs.
One possible explanation is that PLA1 presents a structure that
inefficiently binds to short-chain TAGs. The ‘lockhole-hinge-lock
pin’ activity switch in PLA1 may be locked by an accessory
C-terminal a-helix, therefore decreasing the penetration capacity
into the interface of TC4 to activate the lipase [9]. Therefore, we
Fig. 1. (A) Overlay of PLA1 with the C-terminal helical extension (red) and TLL (green) structures represented as cartoon form. (B) Sequence alignment of PLA1 and TLL (PDB
id:1EIN). Secondary structural elements of the lipase crystal structure are shown at the top of the alignment. Arrows indicate b-strands, and helical curves denote a-helices.
Residues highlighted in red background are identical among the compared proteins, residues highlighted in red are conserved, and the lock residues are highlighted by green
frames, respectively. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)
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R. Xin et al. / Journal of Colloid and Interface Science 488 (2017) 149–154
Table 1
Chain length selectivity of PLA1 and TLL by emulsified method.
Lipase
Specific activitya
TC4
TC10
TC18
PLA1
TLL
477.04 ± 20.43
5105.05 ± 89.26
3092.35 ± 49.24
7702.71 ± 30.22
1463.11 ± 80.91
4091.32 ± 120.34
TC4/TC18 ratio
TC10/TC18 ratio
0.33
1.25
2.11
1.88
a
Specific activity was determined by emulsified method and expressed in units (U) per milligram of lipase. One U corresponds to 1 lmol of free fatty acid released per
minute. The values were mean ± standard deviation based on three independent experiments.
Fig. 2. Chain-length specificity of PLA1 and TLL. Activity measurements were performed using TC4, TC10 or TC18 emulsion.
assume that the C-terminal region of PLA1 may be involved in
interfacial activation and affect the chain-length specificity.
3.3. Substrate specificities on PC/TAG
The hydrolytic activities of PLA1 and TLL were measured using
PC (soybean-PC) and TAG (soybean oil) emulsions at pH 7.0 and
25 °C. PLA1 was found to display both higher phospholipase
activity (4403.00 ± 30.24 U/mg) and lipase activity (8728.31 ±
300.71 U/mg) than TLL. In addition, PLA1 displayed a higher ratio
of phospholipase to lipase activity (0.504) compared with TLL
(0.00685) (Table 2).
3.4. Kinetic studies using the emulsion method
To explain the different substrate specificities towards PC/TAG
between PLA1 and TLL, the kinetic parameters of lipase were
determined using Lineweaver-Burk plots (Table 3). The catalytic
efficiency (kcat/KM) of PLA1 and TLL were found to be similar with
TAG as substrate. However, the kcat/KM of TLL was 6.08-fold lower
than that of PLA1 using PC as substrate. Furthermore, the substrate
affinity constant (KM) of TLL on PC was 3.67-fold lower compared
with that of PLA1.
Table 2
Substrate specificities on PC/TAG of PLA1 and TLL.
Lipase
PLA1
TLL
Specific activitya
PC/TAG ratio
PC
TAG
4403.00 ± 30.24
136.5100 ± 14.26
8728.3100 ± 300.71
19930.8300 ± 500.23
0.504
0.00685
a
Specific activity was determined by emulsified method and expressed in units
(U) per milligram of lipase. One U corresponds to 1 lmol of free fatty acid released
per minute.
3.5. Kinetic measurements by monolayer film technique
The monolayer technique is an interfacial tensiometry method,
simultaneously monitoring and controlling the surface pressure.
Hence, this method also allows to influence physicochemical
parameters of the substrate such as molecular orientation and
molecular density [45]. Therefore, determination of the interfacial
properties of PLA1 and TLL by the monolayer technique can be
helpful to further explain the different substrate specificities
towards PC/TAG.
PLA1 and TLL lead to the conversion of TAG into Sn-2 monoglyceride (2-MAG) and FA. Hence, the reaction mixture is composed of
at least four surface-active ingredients (TAG, MAG, FA and lipase)
leading to a complex equilibrium [46]. A competition for the interface among lipases, long chain fatty acids (LCFAs) and 2-MAGs
occurs. Previous results have demonstrated that 2-MAG excludes
both TAG and lipase from the interface [47]. It is worth mentioning
here that in these experiments a low concentration of b-CD
(0.7 mM) was applied to the aqueous subphase to facilitate the
solubilization of MAG and LCFA [48]. Karray et al. have shown that
the b-CD in the aqueous phase has not effect on the stability of the
monolayer [8,47].
PLA1 and TLL on a triolein monolayer showed a maximum
activity of 1.49 and 1.50 mol cm 2 M 1 min 1 at the a surface
pressure of 25 and 20 mN m 1, respectively (Fig. 3A). PLA1 showed
a bell shaped curve on the DOPC substrate with a characteristic
optimal surface pressure (Fig. 3B). The highest hydrolytic
activity of PLA1 and TLL on DOPC monolayer was 0.40 and
0.017 mol cm 2 M 1 min 1, respectively. The initial increase in
hydrolytic activity at surface pressure may be ascribed to an
improvement of enzyme-substrate binding, whereas the decrease
of hydrolysis at high surface pressure may due to poor penetration
capacity of the lipase into the surface [49,50].
Furthermore, the hydrolytic activity of TLL measured on the DOPC
films was very low even at high lipase loadings. Furthermore, a
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R. Xin et al. / Journal of Colloid and Interface Science 488 (2017) 149–154
Table 3
Kinetic parameters of PLA1 and TLL by emulsified method.
a
b
c
d
e
Lipase
Kma,e (mmol)
Vmaxb,e (lmol min
1
PC
PLA1
HLL
1.36 ± 0.037
0.37 ± 0.0098
8841.73 ± 300.21
389.59 ± 9.56
5157.68 ± 128.54
227.26 ± 5.78
3780.51
622.29
TAG
PLA1
HLL
1.53 ± 0.045
2.13 ± 0.078
3891.05 ± 87.98
8354.22 ± 261.32
2269.78 ± 56.89
4873.294 ± 134.87
1488.10
2283.10
mg
1
)
kcatc,e (s
1
)
kcat/Kmd,e (s
1
mM
1
)
Km: the substrate affinity constant.
kcat: the turnover of the enzymatic reaction.
Vmax: the maximal rate.
kcat/Km: the catalytic efficiency.
The values are mean ± standard deviation based on three independent experiments.
Fig. 3. Variations in hydrolytic activity of (A) triolein, and (B) DOPC, with surface pressure by monolayer technique. PLA1 and TLL were injected into the reaction compartment
of a zero-order trough (volume, 2.5 mL; surface area, 12.56 cm2). Buffer: 10 mM PBS, pH 7.0. Activities are expressed as the number of moles of substrate hydrolyzed per time
(min) unit (M) and surface unit (cm2).
pronounced lag phase of approx. 24 min was observed. This may
indicate an energy barrier, due to conformational changes in the
enzyme associated with the interfacial activation [8,51]. As
expected, these results are in accordance with the kinetic parameters measured by the emulsion method. These findings support the
idea that the C-terminal domain is involved in interactions with
the PC interface.
As PC is a major component of lipid membranes, we hypothesize that the C-terminal extension acts as a membrane anchor that
increases the affinity of PLA1 towards phospholipid membranes.
The amino acid sequence of C-terminal region present in PLA1
has high homology with those of GZEL and YLLIP8. In previous
studies, it has been suggested that YLLIP8 is associated with
Y. lipolytica cell wall as a membrane-bound protein [15]. The above
evidence may render this hypothesis more attractive.
Asp294 of the C-terminal helix and Arg87 of the a3 helix in PLA1
lid were found to be conserved among the RML, TLL and GZEL.
The a9 helix of C-terminal region may control the opening of lid
to regulate the activity of TAG by transiently interacting with the
a3 helix of lid, following the similar ‘double-lock’ activation
mechanism of GZEL [40]. We propose that the C-terminal region
of PLA1 plays a significant role in interfacial activation to affect
the chain-length specificity and the C-terminal helical tail anchoring onto PC to regulate the phospholipase activity. This hypothesis
is in agreement with the observation that the C-terminal helical
region of YLLIP8 acts as a transient membrane anchor [15]. Further
experiments are required to validate this hypothesis, but it would
be helpful to explain the role of an extra C-terminal region of PLA1
and bring new insight into rational design of novel lipases with
intriguing functionalities.
4. Conclusion
Acknowledgments
The C-terminal region present in the lipase family is important
for interfacial binding [51], signal transduction [52] and
membrane-trafficking and -disruption [53]. In the present study,
the extra C-terminal region of PLA1 was found to be essential for
its substrate specificity and enzymatic property. The residue
This work was supported by National High Technology
Research and Development Program of China (2014AA093514
and 2014AA093601), National Science Funds Foundation of China
(31471690), and Science and Technology Planning project of
Guangdong province (2014B020204003 and 2015B020231006).
154
R. Xin et al. / Journal of Colloid and Interface Science 488 (2017) 149–154
Appendix A. Supplementary material
Supplementary data associated with this article can be found, in
the online version, at http://dx.doi.org/10.1016/j.jcis.2016.10.058.
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