Zoologica Scripta
Molecular phylogeny of Abyssocladia (Cladorhizidae:
Poecilosclerida) and Phelloderma (Phellodermidae:
Poecilosclerida) suggests a diversification of chelae
microscleres in cladorhizid sponges
SERGIO VARGAS, DIRK ERPENBECK, CHRISTIAN GÖCKE, KATHRYN A. HALL, JOHN N. A. HOOPER,
DORTE JANUSSEN & GERT WÖRHEIDE
Submitted: 21 March 2012
Accepted: 2 July 2012
doi:10.1111/j.1463-6409.2012.00560.x
Vargas, S., Erpenbeck, D., Göcke, C., Hall, K. A., Hooper, J. N. A., Janussen, D. &
Wörheide, G. (2012) Molecular phylogeny of Abyssocladia (Cladorhizidae: Poecilosclerida)
and Phelloderma (Phellodermidae: Poecilosclerida) suggests a diversification of chelae microscleres in cladorhizid sponges. —Zoologica Scripta, 00, 000–000.
The taxonomic placement of Abyssocladia Lévi, 1964 (Poecilosclerida) is controversial, having
been assigned at various times to three different families (Mycalidae, Cladorhizidae and Phellodermidae) in two different suborders (Mycalina and Myxillina, respectively), since its inception
in 1964. It shares the general body plan with the carnivorous sponge family Cladorhizidae (Mycalina), including the lack of an aquiferous system. Nevertheless, it also has chela spicules apparently identical to those in Phelloderma Ridley & Dendy 1886 (Phellodermidae, Myxillina). The
ongoing debate on the position of Abyssocladia ultimately reduces to a discussion on the use of
chelae morphology to infer phylogenetic relationships within Poecilosclerida. Here, we infer the
phylogenetic relationships of the genera Phelloderma and Abyssocladia using two independent
molecular markers (28S rDNA and COI), showing that Abyssocladia is not closely related to
Phelloderma and belongs in Cladorhizidae. We suggest that despite their complexity, chelae
morphology can evolve independently in different poecilosclerid lineages and as such might be
potentially misleading as indicator of the phylogenetic history of the group. We also provide the
first phylogenetic analysis of the carnivorous sponge family Cladorhizidae and give first insights
into the evolution of this feeding mode in Poecilosclerida and, more generally, in Porifera.
Corresponding author: Gert Wörheide, Department of Earth- & Environmental Sciences, Palaeontology and Geobiology, Ludwig-Maximilians-Universtität München, Richard-Wagner Str. 10, D-80333
München, Germany; GeoBio-CenterLMU, Richard-Wagner Str. 10, D-80333 München, Germany and
Bavarian State Collections of Palaeontology and Geology, Richard-Wagner Str. 10, D-80333 München,
Germany. E-mail: woerheide@lmu.de
Sergio Vargas, Dirk Erpenbeck Department of Earth- & Environmental Sciences, Palaeontology and
Geobiology, Ludwig-Maximilians-Universtität München, Richard-Wagner Str. 10, D-80333
München, Germany. E-mail: s.vargas@lrz.uni-muenchen.de
Dirk Erpenbeck, GeoBio-CenterLMU, Richard-Wagner Str. 10, D-80333 München, Germany.
E-mail: erpenbeck@lmu.de
Christian Göcke, Dorte Janussen, Forschungsinstitut und Naturmuseum Senckenberg, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany. E-mails: christian.goecke@senckenberg.de,
dorte.janussen@senckenberg.de
Kathryn A. Hall, John N.A. Hooper, Queensland Museum, PO Box 3300, South Brisbane, Qld 4101,
Australia. E-mail: kathryn.hall@qm.qld.gov.au, john.hooper@qm.qld.gov.au
John N.A. Hooper, Eskitis Institute for Cell and Molecular Therapies, Griffith University, Brisbane,
Australia. E-mail: john.hooper@qm.qld.gov.au
Introduction
Within the species-rich demosponge order Poecilosclerida
Topsent, 1928, members of the family Cladorhizidae
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Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters
Dendy, 1922 are well known for their carnivorous feeding
mode (Vacelet & Boury-Esnault 1995). Carnivorous
sponges passively prey on small crustaceans and other
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Morphological diversification in carnivorous sponges
d
S. Vargas et al.
micro-invertebrates and have a body-plan that is atypical
for sponges because it lacks an aquiferous system, or if
present, have one which is highly modified and not used
for filter feeding. This remarkable trait, in association with
its relatively high species richness (123 spp. in seven genera in Cladorhizidae), has made cladorhizid sponges the
subject of special attention among sponge biologists
(Vacelet & Duport 2004; Riesgo et al. 2007), especially with
regard to their taxonomy (e.g. Lehnert et al. 2005, 2006;
Vacelet 2008; Vacelet et al. 2009; Ise & Vacelet 2010).
From a systematic perspective, Cladorhizidae is a problematic taxon within Poecilosclerida as it lacks any conclusive synapomorphy. Its high diversity in chela morphology
– microscleres with alae at each end of a central shaft
(Fig. 1 Boury-Esnault & Rützler 1997) – is at odds with
the current classification of poecilosclerid sponges. This
classification is largely influenced by the assumption that
chelae are homologous in that group and can be used to
reconstruct phylogenetic relationships because of their
morphological complexity and presumed selective neutrality (Hajdu et al. 1994; Hajdu & Van Soest 1996; van Soest
2002; Vacelet 2007). A number of likely evolutionary
innovations that have been used to diagnose cladorhizids
and could potentially represent ‘strong’ synapomorphies
(e.g. carnivory, the absence or major modification of the
aquiferous system, a stipitate symmetrical body shape, a
special arrangement of megascleres and ⁄ or microscleres,
and the presence of sigmancistra among this last spicule
type) and have been questioned because taxa in other poecilosclerid families (e.g. Esperiopsis koltuni Ereskovsky &
Willenz 2007 in Esperiopsidae Hentschel, 1923; species of
Euchelipluma Topsent, 1909 in Guitarridae Dendy, 1924)
also exhibit these characters rendering them either homoplasious or symplesiomorphic (Hajdu & Vacelet 2002;
Ereskovsky & Willenz 2007). This interpretation, how-
Fig. 1 Chelae microscleres present in representatives of the order
Poecilosclerida. From left to right: palmate chelae of Clathria
australiensis, arcuate chelae of Hamigera dendyi and anchorate
chelae of Crella incrustans. S, shaft, A, alae. Images not at scale.
Electron microscope photos: J. N. A. Hooper.
2
ever, relies principally on the assumed ‘correctness’ of the
currently accepted taxonomic classification of the order
Poecilosclerida, which has not been tested to date and has
not been supported by independent evidence, for example,
in any molecular phylogeny published to date (Erpenbeck
& Wörheide 2007; Wörheide et al. 2012).
Vacelet (2007) first recognized the important position of
cladorhizid sponges within poecilosclerid systematics; he
suggested that the microsclere morphological diversity
observed in carnivorous sponges could have resulted from
its convergent evolution. Cladorhizidae is the only poecilosclerid family that possesses all basic forms of chela
(palmate, anchorate and arcuate; Fig. 1). The diversity in
chelae morphology within the groups means that Cladorhizidae can fit the current definition of several poecilosclerid families in the suborders Mycalina Hajdu et al.
1994 and Myxillina Hajdu et al. 1994; suggesting that the
subordinal classification of Poecilosclerida requires closer
scrutiny (as suggested by Erpenbeck & Wörheide 2007).
Abyssocladia provides an exemplary case-in-point to test
the ‘puzzling’ problem cladorhizid microscleres represent
within the current poecilosclerid classification. The position of Abyssocladia has been controversial. Van Soest &
Hajdu (2002) included Abyssocladia within the genus Phelloderma Ridley & Dendy 1886 based on the ‘similar and
peculiar shape of their isochelae’, changing thereby its
subordinal assignment from the Mycalina to the Myxillina.
Abyssocladia was, however, relocated in Cladorhizidae by
Vacelet (2006) who considered the shape of a single spicule insufficient to justify the (subordinal) transfer. From
an evolutionary perspective, testing the phylogenetic position of Abyssocladia, whether in Cladorhizidae (Mycalina)
(with which it shares the lack of an aquiferous system, a
stipitate symmetrical body and a carnivorous habit, and
the presence of mycalostyles and sigmancistra spicules) or
in Phellodermidae (Myxillina) (as indicated by the shape of
its arcuate chelae), is not a trivial matter (for a discussion
see Lopes et al. 2012). There are important implications
for the use of established or traditional morphological
characters (e.g. chela microscleres) for the classification of
poecilosclerid sponges. If chelae are not good indicators of
the evolutionary history of the order, any interpretations
of its internal phylogenetic structure based on this character may be inaccurate.
Here, we present a phylogenetic analysis of the genera
Abyssocladia and Phelloderma aimed to clarify their relative
position within the order Poecilosclerida. We sequenced
two independent molecular markers (i.e. 28S rDNA and
COI) for all non-monotypic cladorhizid genera and a new
species of Phelloderma collected in the Southern Ocean
and assess alternative hypotheses on the position of Abyssocladia advanced by researchers using morphological
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Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters
S. Vargas et al.
observations. We provide the first phylogenetic assessment
of the family Cladorhizidae, give insights into the evolution of chelae within Cladorhizidae and discuss implications for the systematics of Poecilosclerida.
Materials and methods
Specimen collection and identification
Most specimens used for the present study were collected
during the German ANT XXIV ⁄ 2-SYSTCO I Expedition
(2007 ⁄ 2008) to the Antarctic Weddell Sea. Specimens
were collected mainly using a big trawl (similar to an
Agassiz trawl) and a small Rauschert dredge, but some
sponges were also collected using a boxcorer or a multicorer. All the specimens were preliminary sorted on board
and fixed in 96% ethanol. Cladorhizid specimens were
identified to genus level by Dorte Janussen and Alexander
Plotkin and are deposited at Senckenberg Museum and
Research Institution, Frankfurt, Germany (see Table 1 for
details on the catalogue numbers). A brief description of
these specimens including SEM or light microscopy photographs is provided in the Supporting information. Phelloderma was identified by Christian Göcke and Eduardo
Hajdu, the specimen is deposited at Senckenberg Museum
and Research Institution, Frankfurt, Germany (Table 1)
and its detailed description will be published elsewhere
(Christian Göcke and Dorte Janussen, in prep.). In addition to these specimens, one specimen of Asbestopluma obae
was collected in Antarctica during the New Zealand’s
National Institute of Water and Atmospheric Research
(NIWA) BioRoss (2004) expedition and was identified by
Michelle Kelly (NIWA), and a second specimen of this
genus, Asbestopluma hypogea Vacelet & Boury-Esnault,
1996 was collected by Jean Vacelet off Marseille (Table 1).
Tissue of specimens of monotypic cladorhizid genera was
not available to us at the time of the study, thus these genera were not included in the analysis.
Molecular methods
We obtained genomic DNA using the DNeasy Blood &
Tissue kit (Qiagen, Hilden, Germany) according to the
manufacturer’s protocol. After extraction, the D13-E13
domains of the 28S rDNA and the standard barcoding
(Folmer) fragment of the mitochondrial cytochrome oxidase 1 gene regions were amplified using primers NL4F
and NL4R (Nichols 2005), and dgLCO1490 and
dgHCO2198 (Meyer et al. 2005), respectively. PCR products were either sequenced directly after EXOSAP-IT (Affymetrix, Santa Clara, California, USA) clean-up or cloned
using the TOPO TA Cloning kit (Invitrogen, Carlsbad,
California, USA). Positive colonies (at least 8) were picked
and boiled in 10 lL HPLC grade water for 5 min to
release the DNA; DNA was then amplified using T3 ⁄ T7
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Morphological diversification in carnivorous sponges
primers. PCR products of the expected size were excised
from a 1.5% agarose gel and sequenced in both directions
using the T3 ⁄ T7 primers and the BIGDYE Terminator
version 3.1 chemistry (Applied Biosystems, Foster City,
California, USA). Sequencing reactions were precipitated
using standard ethanol-sodium acetate precipitation and
analysed on an ABI 3700 Genetic Analyzer at the Genomic Sequencing Unit of the Department of Biology, LMU
München. The resulting chromatograms were visualized
and assembled in CodonCode Aligner (Codon Code Corporation, Dedham, Massachusetts, USA). Poriferan origin
of all sequences was determined using NCBI BLAST
(Johnson et al. 2008). Table 1 contains the EMBL
sequence database accession numbers for each sequence
generated in this study.
Phylogenetic analyses
New sequences were manually aligned to existing demosponge (structurally annotated) 28S rDNA and (Folmer)
COI (for details see http://www.spongegenetrees.org/
Erpenbeck et al. 2007, 2004, 2008) data matrices. In addition, both data sets were supplemented with poecilosclerid
sequences generated for the Sponge Barcoding Project
(Table 1; http://www.spongebarcoding.org; Wörheide &
Erpenbeck 2007). We included new sequences of the poecilosclerid genera Neofibularia (Desmacellidae) and Rhabderemia (Rhabderemiidae). Previous molecular studies have
shown that these genera are not closely related to poecilosclerid sponges bearing chelae microscleres (Erpenbeck
et al. 2007). We, therefore, used a comprehensive sample
of demosponge genera and families in the analysis of 28S
rDNA and COI. As this broad taxon sampling can result
in the exclusion of important phylogenetic information
(unalignable regions) in the analysis of the 28S rDNA, we
ran ML and Bayesian analyses using a restricted data set
including only chelae-bearing poecilosclerids and using
representatives of the family Clionaidae as outgroup for
Poecilosclerida (Morrow et al. 2012).
Phylogenetic analyses were performed on each data
matrix separately. For COI, the computer programs RAXML
7.2.8 (Stamatakis 2006) and MRBAYES 3.1.2 (Ronquist &
Huelsenbeck 2003) were used to infer a bootstrapped
(1000 fast bootstrap pseudoreplicates; Stamatakis et al.
2008) maximum likelihood (ML) and a Bayesian phylogenetic tree, respectively. The GTR model of sequence evolution (Tavaré 1986) was used in both analyses, and
among-site rate variation was modelled using a discrete
Gamma with four rate categories (Yang 1994). The GTR
model is the only DNA model available in RAXML, we used
this same model for the Bayesian analysis to facilitate comparisons between ML and Bayesian phylogenies and
because over-parameterization, normally, does not negatively
3
Morphological diversification in carnivorous sponges
d
S. Vargas et al.
Table 1 New poecilosclerid specimens sampled for this study. Institution: NIWA, National Institute of Water and Atmospheric Research,
Wellington, New Zealand; SMF, Senckenberg Museum Frankfurt, Frankfurt am Main, Germany; QM, Queensland Museum, Brisbane,
Australia. SBP, Sponge Barcoding Project
Location
Accession number
Suborder
Family
ID
Institution ⁄ Voucher-No.
Latitude
Longitude
28S DNA
COI
SBP Number
Mycalina
Cladorhizidae
Mycalidae
Abyssocladia sp.
Asbestopluma hypogea
Asbestopluma obae
Cladorhiza sp.
Cladorhiza sp.
Chondrocladia sp.
Neofibularia hartmani
Neofibularia irata
Mycale mirabilis
Microcionidae
Clathria abietina
SMF ⁄ 11750
–
NIWA ⁄ 28893
SMF 11753
SMF ⁄ 11751
SMF ⁄ 11752
QM ⁄ G306606
QM ⁄ G307266
QM ⁄ G300561
QM ⁄ G306269
QM ⁄ G307148
QM ⁄ G305553
QM ⁄ G300508
QM ⁄ G306048
QM ⁄ G306154
QM ⁄ G304846
QM ⁄ G311840
QM ⁄ G306423
QM ⁄ G307278
QM ⁄ G314045
QM ⁄ G305498
QM ⁄ G305135
QM ⁄ G304980
QM ⁄ G300696
QM ⁄ G300541
QM ⁄ G300607
QM ⁄ G312904
QM ⁄ G300820
QM ⁄ G300289
QM ⁄ G306063
QM ⁄ G313145
QM ⁄ G301219
QM ⁄ G304489
QM ⁄ G305838
QM ⁄ G301225
QM ⁄ G304373
QM ⁄ G304056
QM ⁄ G300194
QM ⁄ G305473
QM ⁄ G307601
QM ⁄ G304247
QM ⁄ G305520
QM ⁄ G304718
QM ⁄ G306386
QM ⁄ G313319
QM ⁄ G304254
QM ⁄ G304256
QM ⁄ G300550
SMF ⁄ 11726
–
–
)71.7675
79.1333
)62.0145
)70.0669
)22.2011
)23.4669
)25.6167
)25.3336
)23.4514
)21.7847
)11.4517
)19.4672
)19.9333
40.3050
)28.4869
7.2842
)23.4669
)23.8939
)21.7847
)14.8192
)22.3347
)22.3000
)12.4000
)20.5667
)10.2183
)10.4167
)11.8000
)19.6853
1.2189
1.1667
4.6667
9.6850
40.4269
)14.5836
)35.0834
)28.3000
)21.9686
)23.4347
)14.4675
)21.7847
)10.2675
7.2514
)15.3619
)14.7006
)14.7006
)28.7839
)64.48
–
–
171.1092
4.4833
)2.9833
)3.3267
155.2353
151.9342
113.3833
153.0181
151.9019
152.4511
136.4686
117.5675
118.2167
151.5000
113.5639
134.5014
151.9342
252.4111
152.4503
145.5192
152.7178
166.4167
130.8167
149.0834
148.1025
141.7678
149.2667
118.1014
103.8347
103.7500
119.0167
118.7347
116.7833
145.3356
137.7347
113.8000
152.4675
151.8850
145.4358
152.4503
124.0342
134.3181
137.5550
145.4347
145.4347
113.9681
2.8753
HE611627
HE611628
–
HE611629
HE611630
HE611631
–
HE611632
–
HE611633
–
–
–
HE611634
–
–
–
–
–
–
–
–
–
HE611635
–
–
–
–
–
HE611636
HE611637
HE611638
HE611639
HE611640
HE611641
–
–
HE611642
–
HE611643
HE611644
–
HE611645
–
–
–
–
–
HE611646
HE611581
HE611582
HE611583
HE611584
HE611585
HE611586
HE611587
HE611588
HE611589
HE611590
HE611591
HE611592
HE611593
HE611594
HE611595
HE611596
HE611597
HE611598
HE611599
HE611600
HE611601
HE611602
HE611603
HE611604
HE611605
HE611606
HE611607
HE611608
HE611609
HE611610
HE611611
HE611612
HE611613
–
–
HE611614
HE611615
–
HE611616
HE611617
HE611618
HE611619
HE611620
HE611621
HE611622
HE611623
HE611624
HE611625
HE611626
–
–
–
–
–
–
SBP642
SBP650
SBP572
SBP646
SBP645
SBP731
SBP756
SBP745
SBP738
SBP741
SBP1022
SBP643
SBP641
SBP1023
SBP739
SBP742
SBP743
SBP652
SBP570
SBP579
SBP1026
SBP653
SBP682
SBP736
SBP1027
SBP723
SBP688
SBP730
SBP729
SBP696
–
–
SBP732
SBP648
SBP700
SBP737
SBP687
SBP647
SBP1025
SBP690
SBP701
SBP571
–
Desmacellidae
Microcionina
Clathria
Clathria
Clathria
Clathria
cervicornis
cancellaria
reinwardti
kylista
Clathria conectens
Acarnidae
Myxillina
Rhabderemiidae
Coelosphaeridae
Crambeidae
Clathria rugosa
Paracornulum dubium
Paracornulum sp. 819
Rhabderemia sorokinae
Lissodendoryx sp. 489
Monanchora sp. 994
Monanchora sp. 0605
Monanchora clathrata
Hymedesmiidae
Crella sp. 4778
Crella incrustans
Crella spinulata
Phorbas fictitioides
Iotrochotidae
Phorbas sp. 1539
Iotrochota baculifera
Crellidae
Iotrochota coccinea
Phellodermidae
Iotrochota acerata
Phelloderma sp.
affect Bayesian phylogenetic inference (Huelsenbeck &
Rannala 2004). For the Bayesian analysis, two independent
runs with one cold and five heated Metropolis4
Coupled Monte-Carlo Markov Chain (MCMCMC) chains
each were set to sample trees every 500 generations for a
total of 10 000 000 generations using the default prior and
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S. Vargas et al.
temperature settings available in MRBAYES 3.1.2. After completion, 25% of the samples were discarded as burn-in and a
50% majority-rule consensus tree was calculated. Chain
convergence was assessed using AWTY (Wilgenbusch et al.
2004). With the 28S rDNA data set, we inferred a
bootstrapped (1000 fast pseudo-replicates) ML and a Bayesian phylogeny with the programs RAXML 7.2.8 and PHASE
2.0 (http://www.bioinf.manchester.ac.uk/resources/phase/),
respectively. For the analysis of this data set, we used the
second most general structural model available (i.e. S7A see
Savill et al. 2001) in PHASE for helices (paired-sites) and
the GTR + GAMMA model for the unpaired sites of the
RNA molecule. Structural annotation of the 28S rDNA data
set was carried out following Erpenbeck et al. (2004) &
Erpenbeck et al. (2007). For the Bayesian analysis, two independent PHASE 2.0 Monte-Carlo Markov Chain (MCMC)
runs were set to sample every 500 generations for a total of
10 000 000 generations; prior to each run, 500,000 generations were discarded as burn-in. To evaluate the probability
of alternative topological arrangements for Abyssocladia and
Phelloderma as well as other groupings proposed in the taxonomic literature, trees sampled during the COI Bayesian
analyses were imported into PAUP*4.0 (Swofford 2003) and
filtered using constraints corresponding to the different
morphology-based hypotheses. In a Bayesian context, the
posterior probability of a bipartition is the frequency with
which the bipartition occurs in the trees sampled from the
posterior distribution during MCMC (Lewis 2001).
Results
COI phylogeny
The inferred COI Bayesian phylogeny (Supporting information) supported the monophyly of chelae-bearing
poecilosclerids and, from this order, the exclusion of several
genera that do not bear chelae, such as Rhabderemia
Topsent, 1890 (Rhabderemiidae, Microcionina) and the
desmacellid genera Biemna Gray, 1867 and Neofibularia
Hechtel, 1965 (Mycalina). In contrast, the ML phylogeny
(Supporting information) inferred a polyphyletic chelaebearing Poecilosclerida with representatives of the genera
Crambe Vosmaer, 1880 and Monanchora Carter, 1883 forming a poorly supported clade with sequences attributed to
species of Niphates Duchassaing & Michelotti, 1864 (Haplosclerida) and Scopalina Schmidt, 1862 (Halichondrida).
In general, both COI phylogenies (Fig. 2) showed at
least some level of disagreement with the current classification of poecilosclerid sponges (sensu Hooper & van Soest
2002), with most suborders – Suborder Latrunculina Kelly
& Samaai, 2002 was not included in the present analysis –
not recovered as monophyletic in either ML or Bayesian
trees. Suborder Myxillina was polyphyletic in all trees sampled in the Bayesian MCMCMC, comprising three inde-
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Morphological diversification in carnivorous sponges
pendent clades. Relationships among chelae-bearing
Microcionina Hajdu et al. 1994 were unresolved in the
Bayesian consensus tree but the monophyly of these taxa
received low posterior probability (P = 0.2061). Within
Mycalina, species of Mycale (Arenochalina) and Cladorhizidae were not related to members of Podospongiidae de
Laubenfels, 1936, which was polyphyletic. Abyssocladia was
included within Cladorhizidae, which formed the sister
clade of Mycale (Arenochalina) (with high support in both
the ML and Bayesian trees). Phelloderma (Myxillina) was
included in a clade with Crella, Phorbas, Strongylacidon and a
specimen labelled as Timea sp. (Supporting information).
This result was also obtained after removal of Timea sp.
(Fig. 2), which likely represents a contamination or a misidentification deposited in GenBank. Finally, a topology
consistent with the monophyly of Abyssocladia + Phelloderma
was not found among the trees (N = 15 001) sampled during one arbitrarily chosen chain of the MCMCMC of the
Bayesian analysis.
28S rDNA analysis
Despite the lesser number of Poecilosclerida samples that
were available for the 28 rDNA analysis, the results from
the 28S rDNA corroborated those from COI (Fig. 3). Poecilosclerid genera lacking chelae (i.e. Rhabderemia and Neofibularia in the present data set) were not recovered as
being related to chelae-bearing genera in either the ML or
Bayesian phylogenies (Supporting information). Chelaebearing taxa (Fig. 3) belonging to different suborders
formed clades that contradicted the currently hypothesized
subordinal classification of Poecilosclerida. For example,
Coelocarteria Burton, 1934 (Mycalina) was not related to
Cladorhizidae + Mycale (Arenochalina), but rather to representatives of Clathria (Microcionina). Regarding the phylogeny of Abyssocladia and Phelloderma, these two genera were
not indicated as closely related in the 28S rDNA ML or
Bayesian phylogenetic trees. In accordance with the COI
results, Abyssocladia was included within the family Cladorhizidae which, together with Mycale (Arenochalina),
formed a highly supported clade. Phelloderma, in contrast,
was related to representatives of Lissodendoryx, Crella and
Phorbas Duchassaing & Michelotti, 1864 (Myxillina); all
these genera formed a highly supported monophylum.
These results were independent of taxonomic sampling or
outgroup choice as the analysis of either the full data set
(see Materials and Methods) or a reduced data set (Fig. 3)
excluding sequences labelled as Geodia spp., which have
been shown to be contaminations (Cárdenas et al. 2010),
and Tethya sp., which can be either a contamination or a
misidentification deposited in GenBank, resulted in a
topology congruent with the inclusion of Abyssocladia
within a monophyletic Cladorhizidae, far from Phelloderma.
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Morphological diversification in carnivorous sponges
d
S. Vargas et al.
Fig. 2 Phylogenetic hypothesis of chelaebearing poecilosclerid sponges based on
partial COI sequences. The topology is
based on the results of the Bayesian
analysis. Support values are given only
for branches with posterior probability
‡0.95. Above the branches an asterisk
indicates posterior probability ‡0.95 (left
asterisk), Maximum Likelihood bootstrap
proportion ‡70% (right asterisk). Vertical
bars indicate subordinal membership:
Myc, Mycalina; Mic, Microcionina; Myx,
Myxillina. The gray boxes correspond to
the genera belonging to the families
Cladorhizidae and Phellodermidae. The
genera Abyssocladia and Phelloderma are
in bold face. SBP# refer to the Sponge
Barcoding Project reference numbers,
accession numbers follow the Sponge
Gene Tree Server formats. The complete
Bayesian and Maximum Likelihood
phylogenetic trees with support values
and branch lengths are provided as
Supporting information.
6
ª 2012 The Authors
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Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters
S. Vargas et al.
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Morphological diversification in carnivorous sponges
Fig. 3 Phylogenetic hypothesis of chelae-bearing poecilosclerid sponges inferred from structurally annotated partial 28S rDNA sequences.
The topology is based on the results of the Bayesian analysis. Support values are given only for branches with posterior probability ‡0.95.
Above the branches an asterisk indicate posterior probability ‡0.95 (left asterisk), Maximum Likelihood bootstrap proportion ‡70% (right
asterisk). Vertical bars indicate subordinal membership: Myc, Mycalina; Mic, Microcionina; Myx, Myxillina. Highlighted in gray genera
belonging to the families Cladorhizidae and Phellodermidae. The genera Abyssocladia and Phelloderma are in bold face. SBP# refer to
the Sponge Barcoding Project reference numbers, accession numbers follow the Sponge Gene Tree Server formats. The complete
Bayesian and Maximum Likelihood phylogenetic trees with support values and branch lengths are provided as Supporting information.
Discussion
The current classification of poecilosclerid sponges is based
principally on the assumption that the morphology of
ª 2012 The Authors
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Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters
chela microscleres reflects the phylogenetic history (cf. van
Soest 2002). Nevertheless, chelae morphology can be
homoplasic – as is the case of the macro- and microscleres
7
Morphological diversification in carnivorous sponges
d
S. Vargas et al.
of other sponge groups (Cárdenas et al. 2011) – and their
presence ⁄ absence has been demonstrated to be environmentally plastic in at least one poecilosclerid genus (see
Maldonado et al. 1999). The alternative taxonomic
positions proposed for Abyssocladia (see Introduction and
Vacelet 2006; van Soest & Hajdu 2002) represent an almost
perfect case study on the diversity of interpretations of
chelae significance for the systematics of Poecilosclerida.
Based on the morphology of chelae, Abyssocladia should
belong in Phellodermidae (van Soest & Hajdu 2002). However, the lack of an aquiferous system, the overall body
shape, and the spicule complement and skeletal organization
suggest affinities of the genus to Cladorhizidae (Vacelet
2006).
Here, we have shown that Phelloderma and Abyssocladia
are not closely related, and that Abyssocladia belongs in
Cladorhizidae. This family was recovered as monophyletic,
with high bootstrap support and posterior probability in
our analysis of COI. In the 28S rRNA ML and Bayesian
phylogenies, Cladorhizidae received low bootstrap support
and posterior probabilities. It is worth noting, however,
that the uncertainty regarding the monophyly of Cladorhizidae in these analyses was caused by the unstable position of Mycale (Arenochalina) in the Bayesian phylogeny and
its inclusion within Cladorhizidae in the ML analysis and
was not caused by the exclusion of any cladorhizid genera
from the family. Additionally, the analysis of a data set
restricted to chelae-bearing poecilosclerids (see Supporting
information) resulted in a monophyletic Cladorhizidae sister to Mycale (Arenochalina) in agreement with the COI results.
With respect to the relationships between Abyssocladia
and Phelloderma, a topology compatible with an Abyssocladia + Phelloderma clade was not sampled during the Bayesian analysis of COI or 28S rRNA sequences, indicating
that the posterior probability of a tree including this clade
is negligible in comparison with that of the optimal and
near-optimal trees – in other words, the hypothesized clade
is artificial. Importantly, this result was not sensitive to
taxon sampling or outgroup choice as revealed by the analysis of different matrices with diverse taxonomic composition and by the close phylogenetic relationship between
Abyssocladia and Cladorhizidae found in trees showing different sister group relationships for Poecilosclerida. From
a morphological perspective, the phylogenetic results
should not be surprising as these genera differ greatly in
their body shape; Abyssocladia is stalked with a spherical or
disc-shaped body (Vacelet 2006), while Phelloderma is subglobular with a cork-like cortex, papillae and a general
skeletal organization resembling the family Suberitidae
(Ridley & Dendy 1886; van Soest & Hajdu 2002). Regarding the relationships of Cladorhizidae, this family was
shown as sister to the mycalid Mycale (Arenochalina) as
8
noted above, however, this sister group relationship should
be treated with caution pending a more complete taxonomic sampling within ‘Mycalina’, and generally within
(chelae-bearing) Poecilosclerida.
From an evolutionary perspective, our results indicate
that a diverse complement of chelae have been independently acquired in the cladorhizid lineage. Owing to their
functional role in the capture of prey (Vacelet & Duport
2004), it is likely that cladorhizid chelae are acted upon by
strong selective pressures. Thus, it is probable that the
carnivorous habit of cladorhizid sponges has led to the
diversity of chelae forms observed among modern representatives of this family (see Introduction and Price et al.
2010 for an example). More speculatively, innovations in
chelae morphology within cladorhizid genera might have
had an impact on the speciation rates within the family, as
judged by its relatively high species richness (see Introduction) and species-specific chelae morphologies. At present,
testing this hypothesis is not possible because of the sparse
intra-genus sampling available. A more thorough sampling
of the family and of other carnivorous sponges currently
classified in different poecilosclerid families (Esperiopsidae
and Guitarridae) will be required to establish a correlation
(if any) between carnivory, chelae morphological diversity
and speciation rates in Cladorhizidae, and carnivorous
sponges in general.
Our findings have broader implications on the biology of
Poecilosclerida beyond the phylogenetic position of Abyssocladia and Phelloderma. Several hypotheses regarding the
evolution of a carnivorous feeding mode in Poecilosclerida
have been advanced by sponge biologists (see Vacelet 2007
for a review). The phylogenetic analyses presented in this
study suggest that a carnivorous feeding mode and the morphological innovations associated with it evolved once in
poecilosclerid sponges. However, species currently classified in two other genera of non-cladorhizid poecilosclerids,
Euchelipluma (Guitarridae) and Esperiopsis (Esperiopsidae),
have been associated with a carnivorous feeding mode. The
phylogenetic position of these two poecilosclerid genera
remains to be determined to corroborate the monophyly of
all carnivorous sponges suggested by their general body
plan and the shared presence of sigmancistra spicules. A
broader analysis of this peculiar sponge group will further
clarify the evolution of carnivory in the diverse order Poecilosclerida and in sponges in general.
Conclusions
We have presented a phylogeny of the genera Abyssocladia
and Phelloderma using independent molecular data sets,
clarified their relative position within the order Poecilosclerida and evaluated hypotheses concerning their morphological characters. Our molecular data support the
ª 2012 The Authors
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Zoologica Scripta ª 2012 The Norwegian Academy of Science and Letters
S. Vargas et al.
proposal of Vacelet (2006) that Abyssocladia is a cladorhizid, and that this family is monophyletic. Conversely,
Phelloderma formed a clade with sponges now classified in
the suborder Myxillina, and as such, Phelloderma and Abyssocladia are only distantly related, contrary to previous
morphological hypotheses based on chelae morphologies
(van Soest & Hajdu 2002). This result implies the independent acquisition of a diverse chelae complement in
Cladorhizidae, likely resulting from an evolutionary diversification related to the carnivorous habit of cladorhizid
sponges. These findings have significant implications for
the systematics of the Poecilosclerida, as foreseen by Vacelet (2006), and in particular the alleged taxonomic importance of chela morphotypes for higher taxonomy. The
present analyses provide only a small contribution to a reevaluation of Poecilosclerida using two independent
molecular markers, but highlight the significance and
growing potential of molecular-based approaches to reciprocally illuminate morphological evidence and to better
resolve the evolutionary history of Poecilosclerida – the
most diverse order of Porifera.
Acknowledgements
We thank Annamarie Gabrenya and Astrid Schuster for
assistance and support in the laboratory. Jean Vacelet
kindly provided the specimen of Asbestopluma hypogea and
reviewed the manuscript. We thank Alexander Plotkin for
his help identifying some of the specimens deposited at
SMF and for doing SEM photographs of most of the
material. Eduardo Hajdu helped with the identification of
the new species of Phelloderma. Constructive comments of
past and present members of the Molecular Geo- and Palaeobiology Lab, LMU München greatly improved the
project. This study was possible thanks to the funding of
the German Science Foundation (DFG), through grants
Wo896 ⁄ 9-1,2 to G. Wörheide and JA1063 ⁄ 14-1,2 to D.
Janussen, respectively. We also want to thank the NIWA
Invertebrate Collection for providing access to samples
from the TAN0402 cruise of the Ministry of Fisheries,
NIWA under the BioRoss biodiversity survey of the western Ross Sea and Balleny Islands, and to Michelle Kelly
(NIWA) for identifying the specimens. The Sponge Barcoding Project thanks the Marine Barcode of Life initiative (MarBol) funded by the Alfred P. Sloan Foundation
and the GeoBio-CenterLMU for financing the subsampling and extraction of 17.000 sponge specimens of the
Queensland Museum. S. Vargas is indebted to N. Villalobos Trigueros and to M. Vargas Villalobos for their constant support during the course of the study. Constructive
comments from Manuel Maldonado and three anonymous
reviewers greatly improved the manuscript, we thank
them.
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Morphological diversification in carnivorous sponges
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Supporting information
Additional Supporting Information may be found in the
online version of this article:
Fig. S1. COI Bayesian Tree inferred with MRBAYES
excluding Timea sp. from GenBank.
Fig. S2. COI ML Tree inferred with RAXML excluding
Timea sp. from GenBank.
Fig. S3. LSU Bayesian phylogeny inferred using PHASE
2.0 and the 7A model of sequence evolution.
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S. Vargas et al.
Fig. S4. LSU phylogeny inferred with RAXML and the
7SA model of sequence evolution.
Fig. S5. LSU phylogeny inferred with PHASE 2.0 and
the 7SA model of sequence evolution. This analysis
excludes specimens of Geodia and Tethya which represent
contaminants or missidentified specimens.
Fig. S6. The analysis excludes specimens of Geodia and
Tethya that represents missidentifications or contaminants.
Data S1. Genus assignment of Cladorhizidae used in:
Vargas et al. Molecular phylogeny of Abyssocladia (Clad-
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Morphological diversification in carnivorous sponges
orhizidae: Poecilosclerida) and Phelloderma (Phellodermidae: Poecilosclerida) suggest a diversification of chelae
microscleres in cladorhizid sponges.
Please note: Wiley-Blackwell are not responsible for the
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for the article.
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